Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Datasets.

Prasad AB, Allard MW, NISC Comparative Sequencing Program, Green ED. Molecular Biology and Evolution. 2008 Sep;25(9):1795-808.

Supplementary Data for Prasad et al. 2008

Supplementary Figures
Supplementary Tables

S1 Protein-coding sequence alignment in gzipped FASTA format
S2 Conserved non-coding sequence alignment in gzipped FASTA format
S3 Assembled sequence contigs for each species as a gzipped tar archive of FASTA files
S4 Coding indel alignments as a human readable text file

Some additional alignment formats by request:

Coding alignment in NEXUS, phylip, and FASTA formats.
Conserved non-coding alignments in NEXUS, phylip, and FASTA formats.

Tree files for Figures 1 and 2:

Figure 1: ML tree from coding sequence in NEXUS and Newick formats.
Figure 2: ML tree from coding plus conserved sequence in NEXUS and Newick formats.

Please email me if you have any further questions at: arjun @ arjunprasad.net